Welcome to the UC seed. Data in this version is a snapshot from June 6, 2011.
The previous UC seed may be seen
Contains 58 archaeal, 902 bacterial, 562 eukaryal, 1713 viral and 0 environmental genomes
Of these, 58 archaeal, 868 bacterial and 29 eukaryal genomes are more-or-less complete
Work on SubsystemsOr, on this machine you can: Use the new Subsystem Editor
Work on FIGfams
Process Saved Assignments Sets
Locate clustered genes not in subsystems
Locate PEGs in SubsystemsIf you wish to locate PEGs in subsystems, you have two approaches supported. You can
give a FIG id, and you will get a list of all homologs in the designated genome that occur in subsystems.
Alternatively, you can specify a functional role, and all PEGs in the genome that match that role will be shown.
Compare Metabolic ReconstructionsIf you wish to compare the reconstructions for two distinct genomes, use this tool.
You should specify two genomes, or a P1K server output directory (as genome1) and a second genome (which
must be a valid genome ID that exists in this SEED). You can ask for functional roles/subsystems that the
genomes have in common, those that exist in genome1 only, or those that exist in only genome2.
Compare GenomesIf you wish to compare the contents of several genomes, you can use this tool.
Choose a set of genomes (at least two).
New Pattern MatchingThe new pattern location tool.