| α-related Fimbriae in Yersinia |
| (GlcNAc)2 Catabolic Operon |
| 2,3-diketo-L-gulonate TRAP transporter |
| 4-Hydroxyphenylacetic acid catabolic pathway |
| 5-FCL-like Experimental |
| 5-FCL-like protein |
| α-Fimbriae
|
| β-Fimbriae
|
| κ-Fimbriae
|
| σ-Fimbriae
|
| 2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone and other bacterial morphogens
|
| 2-Ketogluconate Utilization
|
| 2-methylcitrate to 2-methylaconitate metabolism cluster
|
| 2-phosphoglycolate salvage
|
| ABC transporter alkylphosphonate (TC 3.A.1.9.1)
|
| ABC transporter branched-chain amino acid (TC 3.A.1.4.1)
|
| ABC transporter dipeptide (TC 3.A.1.5.2)
|
| ABC transporter ferric enterobactin (TC 3.A.1.14.2)
|
| ABC transporter glutamine (TC 3.A.1.3.2)
|
| ABC transporter iron(III) dicitrate (TC 3.A.1.14.1)
|
| ABC transporter molybdenum (TC 3.A.1.8.1)
|
| ABC transporter of unknown substrate X
|
| ABC transporter oligopeptide (TC 3.A.1.5.1)
|
| ABC transporter tungstate (TC 3.A.1.6.2)
|
| Acetoin, butanediol metabolism
|
| Acetyl-CoA fermentation to Butyrate
|
| Adhesins in Staphylococcus
|
| Adhesion of Campylobacter
|
| Alanine biosynthesis
|
| Alginate metabolism
|
| Alkaloid biosynthesis from L-lysine
|
| Alkanesulfonates Utilization
|
| Alkanesulfonate assimilation
|
| Alkylphosphonate utilization
|
| Allantoin degradation
|
| Aminoglycoside adenylyltransferases
|
| Ammonia assimilation
|
| Anaerobic respiratory reductases
|
| Apigenin derivatives
|
| Archaeal Flagellum
|
| Archaeal lipids
|
| Archease
|
| Arginine and Ornithine Degradation
|
| Arginine Biosynthesis
|
| Arginine Biosynthesis extended
|
| Arginine Deiminase Pathway
|
| Aromatic amino acid degradation
|
| Aromatic Amin Catabolism
|
| Arsenic resistance
|
| Asp-tRNA(Asn) transamidation
|
| ATP-dependent efflux pump transporter Ybh
|
| ATP-dependent Nuclease
|
| ATP-dependent RNA helicases, bacterial
|
| Auxin biosynthesis
|
| Auxin degradation
|
| A Gram-positive cluster that relates ribosomal protein L28P to a set of uncharacterized proteins
|
| A Hypothetical Protein Related to Proline Metabolism
|
| Bacillus biofilm matrix protein component TasA and homologs
|
| Bacitracin Stress Response
|
| Bacterial Caspases
|
| Bacterial Cell Division
|
| Bacterial Chemotaxis
|
| Bacterial Cytoskeleton
|
| Bacterial hemoglobins
|
| Bacterial motility:Gliding
|
| Bacterial RNA-metabolizing Zn-dependent hydrolases
|
| Beta-Glucoside Metabolism
|
| Beta-lactamase
|
| Betaine biosynthesis from glycine
|
| Bilin Biosynthesis
|
| Biofilm Adhesin Biosynthesis
|
| Biofilm formation in Staphylococcus
|
| Biogenesis of c-type cytochromes
|
| Biogenesis of cbb3-type cytochrome c oxidases
|
| Biogenesis of cytochrome c oxidases
|
| Biotin biosynthesis
|
| Biphenyl Degradation
|
| Branched-Chain Amino Acid Biosynthesis
|
| Butanol Biosynthesis
|
| Cadmium resistance
|
| Caffeic acid derivatives
|
| Calvin-Benson cycle
|
| Campylobacter Iron Metabolism
|
| cAMP signaling in bacteria
|
| Cannabinoid biosynthesis
|
| Capsular heptose biosynthesis
|
| Capsular Polysaccharide (CPS) of Campylobacter
|
| carbazol degradation cluster
|
| Carbon monoxide dehydrogenase maturation factors
|
| Carotenoids
|
| CBSS-1140.3.peg.2017
|
| CBSS-138119.3.peg.2719
|
| CBSS-159087.4.peg.2189
|
| CBSS-160492.1.peg.550
|
| CBSS-176279.3.peg.1262
|
| CBSS-176279.3.peg.1389
|
| CBSS-176279.3.peg.298
|
| CBSS-176279.3.peg.868
|
| CBSS-176299.4.peg.1292
|
| CBSS-176299.4.peg.1996
|
| CBSS-188.1.peg.6170
|
| CBSS-188.1.peg.9880
|
| CBSS-196164.1.peg.1690
|
| CBSS-196164.1.peg.461
|
| CBSS-198094.1.peg.4426
|
| CBSS-203122.12.peg.188
|
| CBSS-205922.3.peg.1809
|
| CBSS-216592.1.peg.3534
|
| CBSS-218491.3.peg.427
|
| CBSS-221109.1.peg.2233
|
| CBSS-221988.1.peg.2137
|
| CBSS-221988.1.peg.771
|
| CBSS-222523.1.peg.1311
|
| CBSS-222523.1.peg.3937
|
| CBSS-224911.1.peg.435
|
| CBSS-235.1.peg.567
|
| CBSS-237727.3.peg.501
|
| CBSS-243265.1.peg.198
|
| CBSS-243265.1.peg.3592
|
| CBSS-243265.1.peg.4415
|
| CBSS-251221.1.peg.1863
|
| CBSS-257314.1.peg.488
|
| CBSS-257314.1.peg.752
|
| CBSS-258594.1.peg.613
|
| CBSS-261591.3.peg.3916
|
| CBSS-261594.1.peg.2640
|
| CBSS-261594.1.peg.788
|
| CBSS-262316.1.peg.2929
|
| CBSS-262719.3.peg.410
|
| CBSS-265072.7.peg.546
|
| CBSS-266117.6.peg.2476
|
| CBSS-269482.1.peg.1294
|
| CBSS-269799.3.peg.2220
|
| CBSS-269801.1.peg.1715
|
| CBSS-269801.1.peg.2186
|
| CBSS-281090.3.peg.464
|
| CBSS-281309.1.peg.50
|
| CBSS-288681.3.peg.1039
|
| CBSS-290633.1.peg.1906
|
| CBSS-292415.3.peg.2341
|
| CBSS-296591.1.peg.2330
|
| CBSS-306254.1.peg.1508
|
| CBSS-312309.3.peg.1965
|
| CBSS-314225.3.peg.515
|
| CBSS-314267.3.peg.390
|
| CBSS-314269.3.peg.1840
|
| CBSS-316057.3.peg.1294
|
| CBSS-316057.3.peg.1308
|
| CBSS-316057.3.peg.3521
|
| CBSS-316057.3.peg.563
|
| CBSS-316057.3.peg.659
|
| CBSS-316273.3.peg.227
|
| CBSS-316273.3.peg.2378
|
| CBSS-316279.3.peg.746
|
| CBSS-316407.3.peg.1371
|
| CBSS-316407.3.peg.2816
|
| CBSS-320372.3.peg.6046
|
| CBSS-320388.3.peg.3759
|
| CBSS-323097.3.peg.2594
|
| CBSS-323098.3.peg.2823
|
| CBSS-323850.3.peg.3142
|
| CBSS-323850.3.peg.3284
|
| CBSS-326442.4.peg.1852
|
| CBSS-342610.3.peg.1536
|
| CBSS-342610.3.peg.1794
|
| CBSS-345072.3.peg.1318
|
| CBSS-354.1.peg.1756
|
| CBSS-354.1.peg.2917
|
| CBSS-370552.3.peg.1240
|
| CBSS-393121.3.peg.1913
|
| CBSS-393124.3.peg.2657
|
| CBSS-393130.3.peg.129
|
| CBSS-393131.3.peg.612
|
| CBSS-393133.3.peg.2787
|
| CBSS-393133.3.peg.695
|
| CBSS-56780.10.peg.1536
|
| CBSS-83331.1.peg.3039
|
| CBSS-83333.1.peg.946
|
| CBSS-84588.1.peg.1247
|
| CBSS-87626.3.peg.3639
|
| CBSS-89187.3.peg.2957
|
| Cell Division Cluster
|
| Cell envelope-associated LytR-CpsA-Psr transcriptional attenuators
|
| Central meta-cleavage pathway of aromatic compound degradation
|
| Chitin and N-acetylglucosamine utilization
|
| Chlorobenzoate degradation
|
| Chlorophyll Biosynthesis
|
| Chlorophyll Degradation
|
| Choline and Betaine Uptake and Betaine Biosynthesis
|
| Choline Transport
|
| Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more.
|
| Chorismate Synthesis
|
| Cinnamic Acid Degradation
|
| Clavulanic acid biosynthesis
|
| Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related
|
| CMP-N-acetylneuraminate Biosynthesis
|
| CO2 uptake, carboxysome
|
| Cobalamin synthesis
|
| Cobalt-zinc-cadmium resistance
|
| Coenzyme A Biosynthesis
|
| Coenzyme B12 biosynthesis
|
| Coenzyme F420-H2 dehydrogenase (methanophenazine)
|
| Coenzyme F420 synthesis
|
| Cold shock, CspA family of proteins
|
| Colonization factor antigen I fimbriae
|
| Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
|
| Competence or DNA damage-inducible protein CinA and related protein families
|
| Conenzyme B12 related Hypothetical: Clusters with cobST
|
| Conserved gene cluster associated with Met-tRNA formyltransferase
|
| Conserved gene cluster possibly involved in RNA metabolism
|
| Control of cell elongation - division cycle in Bacilli
|
| Copper homeostasis
|
| Copper homeostasis: copper tolerance
|
| CO Dehydrogenase
|
| Cresol degradation
|
| CRISPRs
|
| Cyanate hydrolysis
|
| Cyanobacterial Circadian Clock
|
| Cyanophycin Metabolism
|
| Cysteine Biosynthesis
|
| Cysteinyl-tRNA(Cys) synthesis, archaeal
|
| Cytochrome B6-F complex
|
| Cytochrome c oxidases d@O copy
|
| Cytolethal distending toxin of Campylobacter jejuni
|
| D-Alanyl Lipoteichoic Acid Biosynthesis
|
| D-allose utilization
|
| D-Galacturonate and D-Glucuronate Utilization
|
| D-gluconate and ketogluconates metabolism
|
| D-ribose utilization
|
| D-Sorbitol(D-Glucitol) and L-Sorbose Utilization
|
| D-Tagatose and Galactitol Utilization
|
| D-tyrosyl-tRNA(Tyr) deacylase
|
| DedA family of inner membrane proteins
|
| Deoxyribose and Deoxynucleoside Catabolism
|
| De Novo Purine Biosynthesis
|
| De Novo Pyrimidine Synthesis
|
| Di-Inositol-Phosphate biosynthesis
|
| Dihydroxyacetone kinases
|
| Dissimilatory nitrite reductase
|
| DMSP breakdown
|
| DNA-binding regulatory proteins, strays
|
| DNA-replication
|
| DNA Helicase of Unknown Function
|
| DNA phosphorothioation
|
| DNA repair, bacterial
|
| DNA repair, bacterial DinG and relatives
|
| DNA repair, bacterial MutL-MutS system
|
| DNA repair, bacterial RecFOR pathway
|
| DNA repair, bacterial UvrD and related helicases
|
| DNA repair, UvrABC system
|
| DNA Repair Base Excision
|
| DNA structural proteins, bacterial
|
| DNA topoisomerases, Type I, ATP-independent
|
| DNA topoisomerases, Type II, ATP-dependent
|
| dTDP-rhamnose synthesis
|
| EC49-61
|
| ECF class transporters
|
| Elongation factor P modification
|
| Entner-Doudoroff Pathway
|
| ESAT-6 proteins secretion system in Actinobacteria
|
| ESAT-6 proteins secretion system in Firmicutes
|
| Experimental-EFP
|
| Experimental tye
|
| F0F1-type ATP synthase
|
| Fatty Acid Biosynthesis FASII
|
| Fe-S cluster assembly
|
| Fermentations: Lactate
|
| Fermentations: Mixed acid
|
| Flagellum
|
| Flavodoxin
|
| Flavohaemoglobin
|
| Folate Biosynthesis
|
| Formaldehyde assimilation: Ribulose monophosphate pathway
|
| Formate hydrogenase
|
| Fosfomycin resistance
|
| Fructoselysine (Amadori product) utilization pathway
|
| Galactosylceramide and Sulfatide metabolism
|
| General secretory pathway (Sec-SRP) complex (TC 3.A.5.1.1)
|
| Gentisare degradation
|
| Glu-tRNA(Gln) transamidation
|
| Glutamate dehydrogenases
|
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
|
| Glutamine synthetases
|
| Glutaredoxins
|
| Glutathione-dependent pathway of formaldehyde detoxification
|
| Glutathione-regulated potassium-efflux system and associated functions
|
| Glutathione: Biosynthesis and gamma-glutamyl cycle
|
| Glutathione: Non-redox reactions
|
| Glutathione: Redox cycle
|
| Glutathione analogs: mycothiol
|
| Glutathionylspermidine and Trypanothione
|
| Glycerate metabolism
|
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria
|
| Glycerol and Glycerol-3-phosphate Uptake and Utilization
|
| Glycine and Serine Utilization
|
| Glycine Biosynthesis
|
| Glycine cleavage system
|
| Glycogen metabolism
|
| Glycolate, glyoxylate interconversions
|
| Glycolysis and Gluconeogenesis
|
| Glycolysis and Gluconeogenesis, including Archaeal enzymes
|
| Glyoxylate bypass
|
| Glyoxylate Synthesis
|
| GroEL GroES
|
| Heat shock dnaK gene cluster extended
|
| Heme, hemin uptake and utilization systems in GramPositives
|
| Heme and Siroheme Biosynthesis
|
| Hemin transport system
|
| Heterocyst formation in cyanobacteria
|
| Hexitol degradation
|
| Hexose Phosphate Uptake System
|
| Hfl operon
|
| High affinity phosphate transporter and control of PHO regulon
|
| Histidine Biosynthesis
|
| Histidine Degradation
|
| Housecleaning nucleoside triphosphate pyrophosphatases
|
| Hydantoin metabolism
|
| Hydrogenases
|
| Hypothetical Coupled to RecF
|
| Hypothetical Related to Dihydroorotate dehydrogenase
|
| IbrA and IbrB: co-activators of prophage gene expression
|
| Inorganic Sulfur Assimilation
|
| Inositol catabolism
|
| Inteins
|
| Isoleucine degradation
|
| Isoprenoid Biosynthesis
|
| Isoprenoid Biosynthesis: Interconversions
|
| KDO2-Lipid A biosynthesis
|
| Ketoisovalerate oxidoreductase
|
| KH domain RNA binding protein YlqC
|
| L-2-amino-thiazoline-4-carboxylic acid-Lcysteine conversion
|
| L-ascorbate utilization (and related gene clusters)
|
| Lactate utilization
|
| Lactose and Galactose Uptake and Utilization
|
| Lactose utilization
|
| Legionaminic Acid Biosynthesis
|
| Leucine Biosynthesis
|
| Lignine biosynthesis
|
| Lipoic acid metabolism
|
| Lipopolysaccharide assembly
|
| Lipoprotein Biosynthesis
|
| Listeria Pathogenicity Island LIPI-1 extended
|
| Listeria surface proteins: Internalin-like proteins
|
| Listeria surface proteins: LPXTG motif
|
| LOS core oligosaccharide biosynthesis
|
| Lysine Biosynthesis DAP Pathway
|
| Lysine degradation
|
| Lysozyme inhibitors
|
| Macromolecular synthesis operon
|
| Maltose and Maltodextrin Utilization
|
| Mannitol Utilization
|
| Mannose-sensitive hemagglutinin type 4 pilus
|
| Mannose Metabolism
|
| MazEF toxin-antitoxing (programmed cell death) system
|
| Menaquinone and Phylloquinone Biosynthesis
|
| Mercuric reductase
|
| Methicillin resistance in Staphylococci
|
| Methionine Biosynthesis
|
| Methionine Degradation
|
| Methionine Salvage
|
| Methylglyoxal Metabolism
|
| Methylthiotransferases
|
| Molybdopterin biosynthesis
|
| Motility of Campylobacter
|
| Muconate lactonizing enzyme family
|
| MukBEF Chromosome Condensation
|
| Multidrug Resistance, 2-protein version Found in Gram-positive bacteria
|
| Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
|
| Multidrug Resistance Efflux Pumps
|
| Multiple Antibiotic Resistance MAR locus
|
| Murein Hydrolases
|
| Myxoxanthophyll biosynthesis in Cyanobacteria
|
| N-Acetyl-Galactosamine and Galactosamine Utilization
|
| N-heterocyclic aromatic compound degradation
|
| N-linked Glycosylation in Bacteria
|
| Na(+) H(+) antiporter
|
| Na+ translocating decarboxylases and related biotin-dependent enzymes
|
| NAD and NADP cofactor biosynthesis global
|
| Neotrehalosadiamine (NTD) Biosynthesis Operon
|
| NiFe hydrogenase maturation
|
| Nitrate and nitrite ammonification
|
| Nitric oxide synthase
|
| Nitrogen fixation
|
| Nitrosative stress
|
| Nonmevalonate Branch of Isoprenoid Biosynthesis
|
| Nucleoside triphosphate pyrophosphohydrolase MazG
|
| Nudix proteins (nucleoside triphosphate hydrolases)
|
| NusA-TFII Cluster
|
| O-antigen capsule important for environmental persistence
|
| Octadecanoids
|
| One-carbon metabolism by tetrahydropterines
|
| Orphan regulatory proteins
|
| Osmoregulation
|
| Oxidative stress
|
| Oxygen and light sensor PpaA-PpsR
|
| p-Aminobenzoyl-Glutamate Utilization
|
| p-cymene degradation
|
| p-Hydroxybenzoate degradation
|
| P-type ATPase transporter potassium (TC 3.A.3.7.1)
|
| PA0057 cluster
|
| Paerucumarin Biosynthesis
|
| Pentose phosphate pathway
|
| Peptide methionine sulfoxide reductase
|
| Peptidoglycan Biosynthesis
|
| Periplasmic-Binding-Protein-Dependent Transport System for α-Glucosides
|
| Periplasmic disulfide interchange
|
| Periplasmic Stress Response
|
| Perosamine Synthesis Vibrio
|
| Persister Cells
|
| Pertussis toxin
|
| Phenylalanine and Tyrosine Branches from Chorismate
|
| Phenylalanine synthesis
|
| Phenylpropanoids general biosynthesis
|
| Phenylpropanoid compound degradation
|
| Phenylpropionate Degradation
|
| Phosphate metabolism
|
| Photorespiration (oxidative C2 cycle)
|
| Photosystem I
|
| Photosystem I-type photosynthetic reaction center
|
| Photosystem II
|
| Photosystem II-type photosynthetic reaction center
|
| Phycobilisome
|
| Phytoalexin biosynthesis
|
| Phytosterol biosynthesis
|
| Plastoquinone Biosynthesis
|
| Poly-gamma-glutamate biosynthesis
|
| Polyamine Metabolism
|
| Polyhydroxybutyrate metabolism
|
| Polyprenyl Diphosphate Biosynthesis
|
| Polysaccharide deacetylases
|
| Potassium homeostasis
|
| preQ1 salvage
|
| Programmed frameshift
|
| Proline, 4-hydroxyproline uptake and utilization
|
| Proline Synthesis
|
| Prophage-encoded Rst operon
|
| Propionate-CoA to Succinate Module
|
| Proteasome archaeal
|
| Protection from Reactive Oxygen Species
|
| Protein chaperones
|
| Protein degradation
|
| Protein secretion by ABC-type exporters
|
| Proteolysis in bacteria, ATP-dependent
|
| Proteorhodopsin
|
| Proton-dependent Peptide Transporters
|
| Pseudaminic Acid Biosynthesis
|
| Pseudomonas quinolone signal PQS
|
| Purine conversions
|
| Purine Utilization
|
| Putative diaminopropionate ammonia-lyase cluster
|
| Putative hemin transporter
|
| Putative sulfate assimilation cluster
|
| Putative TldE-TldD proteolytic complex
|
| Pyoverdine biosynthesis new
|
| Pyridoxin (Vitamin B6) Biosynthesis
|
| pyrimidine conversions
|
| Pyrimidine utilization
|
| Pyruvate:ferredoxin oxidoreductase
|
| Pyruvate Alanine Serine Interconversions
|
| Pyruvate metabolism I: anaplerotic reactions, PEP
|
| Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
|
| Queuosine-Archaeosine Biosynthesis
|
| Quinate degradation
|
| Quinolinic acid and its derivatives
|
| Quorum-sensing in Vibrio
|
| Quorum sensing regulation in Pseudomonas
|
| Recycling of Peptidoglycan Amino Acids
|
| Recycling of Peptidoglycan Amino Sugars
|
| Redox-dependent regulation of nucleus processes
|
| Resistance to fluoroquinolones
|
| Resistance to Vancomycin
|
| Respiratory Complex I
|
| Respiratory dehydrogenases 1
|
| Restriction-Modification System
|
| Rhamnolipids in Pseudomonas
|
| Rhamnose containing glycans
|
| Riboflavin, FMN and FAD metabolism
|
| riboflavin to FAD
|
| Ribonuclease H
|
| Ribonucleotide reduction
|
| Ribosomal protein S12p Asp methylthiotransferase
|
| Ribosomal protein S5p acylation
|
| Ribosome activity modulation
|
| Ribosome biogenesis bacterial
|
| Ribosome LSU bacterial
|
| Ribosome LSU eukaryotic and archaeal
|
| Ribosome SSU bacterial
|
| RNA 3'-terminal phosphate cyclase
|
| RNA polymerase bacterial
|
| RNA polymerase I
|
| RNA polymerase II
|
| RNA polymerase III
|
| RNA processing and degradation, bacterial
|
| Rrf2 family transcriptional regulators
|
| rRNAs
|
| Rubrerythrin
|
| RuvABC plus a hypothetical
|
| SA:14-24
|
| Salicylate and gentisate catabolism
|
| Salicylate ester degradation
|
| Salicylic acid biosynthesis1
|
| Salmochelin-mediated Iron Acquisition
|
| SecY2-SecA2 Specialized Transport System
|
| Selenocysteine metabolism
|
| Selenoprotein O
|
| Serine-glyoxylate cycle
|
| Serine Biosynthesis
|
| Sex pheromones in Enterococcus faecalis and other Firmicutes
|
| Sialic Acid Metabolism
|
| Siderophore biosynthesis in Staphylococci
|
| Siderophore enterobactin biosynthesis and ferric enterbactin transport
|
| Siderophore pyochelin
|
| SigmaB stress responce regulation
|
| Signal peptidase
|
| Soluble cytochromes and functionally related electron carriers
|
| Spore Coat
|
| Spore germination
|
| Sporulation-related Hypotheticals
|
| Sporulation Cluster III A
|
| Staphylococcus aureus hypothetical repetitive gene loci
|
| Staphylococcus Two-component and Pore-forming Cytolysins
|
| Steroid sulfates
|
| Stringent Response, (p)ppGpp metabolism
|
| Suberine biosynthesis
|
| Succinate dehydrogenase
|
| Sucrose Metabolism
|
| Sucrose utilization
|
| Sulfatases and sulfatase modifying factor 1
|
| Sulfate assimilation
|
| Sulfur oxidation
|
| Tannin biosynthesis
|
| Taurine Utilization
|
| TCA Cycle
|
| Teichoic and lipoteichoic acids biosynthesis
|
| Teichuronic acid biosynthesis
|
| Tellurite resistance: Chromosomal determinants
|
| Terminal AA3-600 quinol oxidase
|
| Terminal cytochrome C oxidases
|
| Terminal cytochrome d ubiquinol oxidases
|
| Terminal cytochrome oxidases
|
| Terminal cytochrome O ubiquinol oxidase
|
| Terpen biosynthesis
|
| The mdtABCD multidrug resistance cluster
|
| Thiamin biosynthesis
|
| Thioredoxin-disulfide reductase
|
| Threonine anaerobic catabolism gene cluster
|
| Threonine and Homoserine Biosynthesis
|
| Threonine degradation
|
| Tocopherol Biosynthesis
|
| Tolerance to colicin E2
|
| Toluene degradation
|
| Ton and Tol transport systems
|
| Toxin-antitoxin replicon stabilization systems
|
| Toxin-antitoxin systems (other than RelBE and MazEF)
|
| Transcription factors bacterial
|
| Transcription factors cyanobacterial RpoD-like sigma factors
|
| Transcription initiation, bacterial sigma factors
|
| Translation elongation factor G family
|
| Translation factors bacterial
|
| Transport of Nickel and Cobalt
|
| Trehalose Biosynthesis
|
| Trehalose Uptake and Utilization
|
| Triacylglycerol metabolism
|
| Tricarballylate Utilization
|
| trimethylamine N-oxide (TMAO) reductase
|
| tRNAs
|
| tRNA aminoacylation
|
| tRNA modification Archaea
|
| tRNA modification Archaea Henri
|
| tRNA nucleotidyltransferase
|
| tRNA processing
|
| Tryptophan synthesis
|
| Twin-arginine translocation system
|
| Two cell division clusters relating to chromosome partitioning
|
| Type 1 pili (mannose-sensitive fimbriae)
|
| Type IV pilus
|
| Ubiquinone Biosynthesis
|
| Ubiquinone Menaquinone-cytochrome c reductase complexes
|
| UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
|
| Universal GTPases
|
| Universal stress protein family
|
| Unknown sugar utilization (cluster yphABCDEFG)
|
| Unsaturated Fatty Acid Metabolism
|
| Unspecified monosaccharide transport cluster
|
| Uptake of selenate and selenite
|
| Urea decomposition
|
| Utilization of glutathione as a sulphur source
|
| V-Type ATP synthase
|
| Valine degradation
|
| Vibrioferrin synthesis
|
| VieSAB signal transduction system of Vibrio
|
| Widespread colonization island
|
| Xanthosine utilization (xap region)
|
| YaaA
|
| YbbK
|
| YcfH
|
| YciO
|
| YgjD and YeaZ
|
| YjeE
|
| ZZ gjo need homes
|
| A Gammaproteobacteria Cluster Relating to Translation |
| A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis |
| A TRAP transporter and a hypothetical |
| ABC transporter glutamate aspartate (TC 3.A.1.3.4) |
| ABC transporter Iron (II) and Manganese |
| ABC transporter nickel (TC 3.A.1.5.3) |
| ABC transporter peptide (TC 3.A.1.5.5) |
| Accessory colonization factor |
| Acetone Butanol Ethanol Synthesis |
| Acetone carboxylase |
| Acetophenone carboxylase 1 |
| Acetyl-CoA pathway of CO2 fixation |
| Acid resistance mechanisms |
| Acyclic terpenes utilization |
| Acyl Homoserine Lactone (AHL) Autoinducer Quorum Sensing |
| Adenosyl nucleosidases |
| Aerobactin siderophore biosynthesis |
| Agrobacterium opine transport |
| Allantoin Utilization |
| Alpha-acetolactate operon |
| Alpha-Amylase locus in Streptocococcus |
| Amidase clustered with urea and nitrile hydratase functions |
| AMP to 3-phosphoglycerate |
| Anaerobic benzoate metabolism |
| Anaerobic Oxidative Degradation of L-Ornithine |
| Anaerobic toluene and ethylbenzene degradation |
| Anthrose Biosynthesis |
| Archaeal membrane bound hydrogenases |
| Archease2 |
| Aromatic amino acid interconversions with aryl acids |
| AttEFGH ABC Transport System |
| Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon) |
| Bacillus Sporulation Killing Factor A Biosynthetic Cluster |
| Bacilysin biosynthesis |
| Bacterial cyanide production and tolerance mechanisms |
| Bacterial Endolysins: autolysins, phage, and phage-like lysins |
| Bacterial light-harvesting proteins |
| Bacteriocin-like peptides Blp |
| Bacteriorhodopsin |
| Benzoate catabolism |
| Benzoate degradation |
| Benzoate transport and degradation cluster |
| beta-glucuronide utilization |
| Beta-lactamase cluster in Streptococcus |
| Biflavanoid biosynthesis |
| Biolumenescence |
| Biosynthesis of Myxol-2' Fucoside (Myxoxanthophyll) |
| BlaR1 Family Regulatory Sensor-transducer Disambiguation |
| Branched chain amino acid degradation regulons |
| Bsub-Spore-Coat |
| C jejuni colonization of chick caeca |
| Capsular Polysaccharide Biosynthesis in Vibrio |
| Capsular Polysaccharides Biosynthesis and Assembly |
| Capsular surface virulence antigen loci |
| Carbon monoxide induced hydrogenase |
| Carbon Starvation |
| Carbonate Biomineralization |
| Carboxysome |
| carnitine metabolism |
| Carnitine Metabolism in Microorganisms |
| Catechol branch of beta-ketoadipate pathway |
| CBSS-101031.3.peg.1876 |
| CBSS-1085.1.peg.1363 |
| CBSS-1313.3.peg.391 |
| CBSS-155864.1.peg.3753 |
| CBSS-164757.7.peg.5020 |
| CBSS-176280.1.peg.1561 |
| CBSS-176299.3.peg.235 |
| CBSS-176299.3.peg.2475 |
| CBSS-1806.1.peg.1285 |
| CBSS-188.1.peg.6720 |
| CBSS-194948.1.peg.143 |
| CBSS-196620.1.peg.2477 |
| CBSS-198215.1.peg.1051 |
| CBSS-204773.3.peg.746 |
| CBSS-205914.5.peg.1403 |
| CBSS-208964.1.peg.3826 |
| CBSS-214092.1.peg.3450 |
| CBSS-216591.1.peg.168 |
| CBSS-216592.1.peg.3937 |
| CBSS-224911.1.peg.6954 |
| CBSS-228410.1.peg.134 |
| CBSS-232721.5.peg.360 |
| CBSS-243277.1.peg.4359 |
| CBSS-246196.1.peg.1974 |
| CBSS-246196.1.peg.364 |
| CBSS-257314.1.peg.676 |
| CBSS-258594.1.peg.3339 |
| CBSS-269801.1.peg.1725 |
| CBSS-269801.1.peg.809 |
| CBSS-272569.1.peg.3198 |
| CBSS-280355.3.peg.2835 |
| CBSS-288000.5.peg.1793 |
| CBSS-291331.3.peg.3674 |
| CBSS-314288.3.peg.1460 |
| CBSS-316056.14.peg.1887 |
| CBSS-316056.14.peg.880 |
| CBSS-316273.3.peg.2709 |
| CBSS-316273.3.peg.448 |
| CBSS-316273.3.peg.922 |
| CBSS-323850.3.peg.3269 |
| CBSS-335541.4.peg.1350 |
| CBSS-342610.3.peg.283 |
| CBSS-343509.6.peg.2644 |
| CBSS-344610.3.peg.2335 |
| CBSS-349102.4.peg.3442 |
| CBSS-350688.3.peg.1509 |
| CBSS-350701.3.peg.3277 |
| CBSS-354.1.peg.876 |
| CBSS-376686.6.peg.291 |
| CBSS-392499.4.peg.4257 |
| CBSS-393121.3.peg.2760 |
| CBSS-393123.3.peg.2365 |
| CBSS-393130.3.peg.794 |
| CBSS-399599.3.peg.3584 |
| CBSS-404974.3.peg.999 |
| CBSS-479435.4.peg.2736 |
| CBSS-49338.1.peg.459 |
| CBSS-502800.3.peg.2785 |
| CBSS-52598.3.peg.2843 |
| CBSS-562.2.peg.5158 SK3 including |
| CBSS-562.2.peg.633 |
| CBSS-584.1.peg.1352 |
| CBSS-584.1.peg.2497 |
| CBSS-584.1.peg.3382 |
| CBSS-584.1.peg.841 |
| CBSS-630.2.peg.3360 |
| CBSS-69014.3.peg.2094 |
| CBSS-83332.1.peg.1531 |
| CBSS-83332.1.peg.3803 |
| CBSS-83333.1.peg.4037 |
| Cellulosome |
| Chloroaromatic degradation pathway |
| Chlorosome |
| Cholera toxin |
| Citrate Metabolism, Transport, and Regulation |
| Citrate Utilization System (CitAB, CitH, and tctABC) |
| Cluster Ytf and putative sugar transporter |
| Coagulation cascade |
| Coenzyme B synthesis |
| Coenzyme F420 hydrogenase |
| coenzyme M biosynthesis |
| Coenzyme PQQ synthesis |
| COG0523 |
| Colanic acid biosynthesis |
| Colicin V and Bacteriocin Production Cluster |
| Competence in Streptococci |
| Conjugative transposon, Bacteroidales |
| Conserved cluster around inner membrane protein gene yghQ, probably involved in polysaccharide biosynthesis |
| Conserved cluster in Enterobacteriaceae downstream from YqjA, a DedA family protein |
| Control of Swarming in Vibrio and Shewanella species |
| Core Oligosaccharide Glycosylation in Pseudomonas |
| Creatine and Creatinine Degradation |
| Cryptic ferrous iron transporter EfeUOB |
| Curli production |
| Cytolysin and Lipase operon in Vibrio |
| CytR regulation |
| D-galactarate, D-glucarate and D-glycerate catabolism |
| D-galactonate catabolism |
| Dehydrogenase complexes |
| Denitrification |
| Dimethylarginine metabolism |
| Dipicolinate Synthesis |
| DNA repair and recombination eukaryotic |
| DNA replication, archaeal |
| EC699-706 |
| ECF S-components - Experimental |
| Ectoine biosynthesis and regulation |
| Energy conserving hydrogenase b, Methanococcales-Methanobacteriales-Methanopyrales |
| Energy conserving hydrogenase, Methanococcales-Methanobacteriales-Methanopyrales |
| Energy-conserving hydrogenase (ferredoxin) |
| Erythritol utilization |
| Ethanolamine utilization |
| eukaryotic rRNA modification and related functions |
| Exopolysaccharide Biosynthesis |
| Extracellular Polysaccharide Biosynthesis of Streptococci |
| F plasmid replication |
| Fatty Acid Biosynthesis FASI |
| Fatty acid degradation regulons |
| Flagellum in Campylobacter |
| Flavanone biosynthesis |
| Flavocytochrome C |
| Folate transporters |
| Formate dehydrogenase |
| Fratricide in Streptococcus |
| Fructooligosaccharides(FOS) and Raffinose Utilization |
| Fructose and Mannose Inducible PTS |
| Fructose utilization |
| G3E |
| GABA and putrescine metabolism from cluters |
| Galactose-inducible PTS |
| Gene Transfer Agent (GTA) Genes |
| Global Two-component Regulator PrrBA in Proteobacteria |
| Glycerol fermenation to 1,3-propanediol |
| Glycine reductase, sarcosine reductase and betaine reductase |
| gram plus late competence |
| Gram Positive Competence |
| Gram-Positive Extracellular Nucleases |
| Group II intron-associated genes |
| H2:CoM-S-S-HTP oxidoreductase |
| Heat shock Cell division Proteases and a Methyltransferase |
| Heme biosynthesis orphans |
| Histidine transporter and regulator |
| HMG CoA Synthesis |
| Homogentisate pathway of aromatic compound degradation |
| HPr catabolite repression system |
| HtrA and Sec secretion |
| Hyaluronate utilization |
| Hydroxyaromatic decarboxylase family |
| Hyperosmotic potassium uptake |
| Indole-pyruvate oxidoreductase complex |
| Inner membrane protein YhjD and conserved cluster involved in LPS biosynthesis |
| Integrons |
| Intracellular septation in Enterobacteria |
| Iron acquisition in Streptococcus |
| Iron acquisition in Vibrio |
| Isobutyryl-CoA to Propionyl-CoA Module |
| L-Arabinose utilization |
| L-fucose utilization |
| L-fucose utilization temp |
| L-rhamnose utilization |
| Lacto-N-Biose I and Galacto-N-Biose Metabolic Pathway |
| Late competence |
| Leucine Degradation and HMG-CoA Metabolism |
| linker unit-arabinogalactan synthesis |
| Lipid A modifications |
| Lipid A-Ara4N pathway ( Polymyxin resistance ) |
| Lipopolysaccharide-related cluster in Alphaproteobacteria |
| Lipoprotein sorting system |
| Listeria phi-A118-like prophages |
| LMPTP YfkJ cluster |
| LMPTP YwlE cluster |
| Luciferases |
| Lysine biosynthesis AAA pathway 2 |
| Lysine fermentation |
| Magnetosome Biomineralization and Function |
| Major Outer Membrane Proteins |
| Malonate decarboxylase |
| mcm5s2U biosynthesis in tRNA |
| Mebrane bound hydrogenases |
| Melibiose Utilization |
| Membrane-bound Ni, Fe-hydrogenase |
| Menaquinone Biosynthesis via Futalosine |
| Menaquinone Biosynthesis via Futalosine -- gjo |
| Mercury resistance operon |
| Methanogenesis |
| Methanogenesis from methylated compounds |
| Methanophenazine hydrogenase |
| methanopterin biosynthesis |
| Methanopterin biosynthesis2 |
| Methylcitrate cycle |
| Mevalonate Branch of Isoprenoid Biosynthesis |
| MexA-MexB-OprM Multidrug Efflux System |
| MexC-MexD-OprJ Multidrug Efflux System |
| MexE-MexF-OprN Multidrug Efflux System |
| MLST |
| mnm5U34 biosynthesis bacteria |
| MT1-MMP Pericellular Network |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) |
| Multidrug Resistance Operon mdtRP of Bacillus |
| Murein hydrolase regulation and cell death |
| my big subsystem |
| mycolic acid synthesis |
| n-Phenylalkanoic acid degradation |
| Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes |
| NAD consumption |
| NAD regulation |
| Naphtalene and antracene degradation |
| Natural DNA Transformation in Vibrio |
| Nitrilase |
| Nonhomologous End-Joining in Bacteria |
| Nonribosomal peptide synthetases (NRPS) in Frankia sp. Ccl3 |
| Nucleolar protein complex |
| O-Methyl Phosphoramidate Capsule Modification in Campylobacter |
| Osmotic stress cluster |
| Osmotically activated L-carnitine ABC transporter in Listeria |
| Outer membrane |
| P uptake (cyanobacteria) |
| P38 MAP kinase pathways |
| PAB1537 experimental |
| Peptidoglycan Crosslinking of Peptide Stems |
| Peptidyl-prolyl cis-trans isomerase |
| Periplasmic Acid Stress Response in Enterobacteria |
| pH adaptation potassium efflux system |
| Phage capsid proteins |
| Phage integrases |
| Phage packaging machinery |
| Phage shock protein (psp) operon |
| Phage tail proteins |
| Phenazine biosynthesis |
| Phenylacetyl-CoA catabolic pathway (core) |
| Phosphoenolpyruvate phosphomutase |
| Phosphoglycerate transport system |
| Phosphonate metabolism |
| Phosphorylcholine incorporation in LPS |
| Plasmid replication |
| Plasmid-encoded conjugative DNA transfer |
| Plasmid-encoded T-DNA transfer |
| PnuC-like transporters |
| Polyadenylation bacterial |
| Polymyxin Synthetase Gene Cluster in Bacillus |
| polyprenyl synthesis |
| Propanediol utilization |
| Prophage lysogenic conversion modules |
| Prophage-encoded Exotoxins |
| Propionyl-CoA to Succinyl-CoA Module |
| Proteasome bacterial |
| Proteasome eukaryotic |
| Proteasome subunit alpha archaeal cluster |
| Protein Acetylation and Deacetylation in Bacteria |
| Protocatechuate branch of beta-ketoadipate pathway |
| Pseudouridine Metabolism |
| Pterin biosynthesis |
| Pterin carbinolamine dehydratase |
| Pterin metabolism |
| Pterin metabolism 3 |
| Purine nucleotide synthesis regulator |
| Putative sugar ABC transporter (ytf cluster) |
| Putrescine utilization pathways |
| pVir Plasmid of Campylobacter |
| Pyridoxin(Vitamin B6) Degradation Pathway |
| Pyrroloquinoline Quinone biosynthesis |
| Pyrrolysine |
| Quorum sensing in Yersinia |
| Quorum Sensing: Autoinducer-2 Synthesis |
| Rad50-Mre11::SbcD-SbcC DNA Repair Module |
| Rcs phosphorelay signal transduction pathway |
| Reductive Dechlorination |
| Regulation of Oxidative Stress Response |
| Regulatory Intramembrane Proteolysis Pathways |
| Release of Dimethyl Sulfide (DMS) from Dimethylsulfoniopropionate (DMSP) |
| Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization |
| Ribonuclease P archaeal and eukaryal |
| Ribosome biogenesis archaeal |
| Ribosome LSU chloroplast |
| Ribosome LSU mitochondrial |
| Ribosome SSU chloroplast |
| Ribosome SSU eukaryotic and archaeal |
| Ribosome SSU mitochondrial |
| RNA polymerase archaeal |
| RNA polymerase archaeal initiation factors |
| RNA polymerase chloroplast |
| RNA polymerase II initiation factors |
| RNA polymerase III initiation factors |
| Rolling-circle replication |
| rRNA modification Archaea |
| rRNA modification Bacteria |
| Salmonella invasion locus |
| Serotype determining Capsular polysaccharide biosynthesis in Staphylococcus |
| Siderophore Yersiniabactin Biosynthesis |
| SLO-NADGH Locus |
| Small acid-soluble spore proteins |
| Sodium Hydrogen Antiporter |
| Sortase |
| SpeB-SpeF extended regulon |
| Sphingolipid biosynthesis |
| Spliceosome |
| Sporulation draft |
| Sporulation gene orphans |
| SS from gene cluster: Bax gene locus |
| Staphylococcal pathogenicity islands SaPI |
| Staphylococcal phi-Mu50B-like prophages |
| Streptococcal Hyaluronic Acid Capsule |
| Streptococcal Mga Regulon |
| Streptococcus agalactiae hemolysin operon |
| Streptococcus agalactiae virulome |
| Streptococcus pneumoniae Vancomycin Tolerance Locus |
| Streptococcus pyogenes recombinatorial zone |
| Streptococcus pyogenes virulence regulators |
| Streptococcus pyogenes Virulome |
| Streptolysin S Biosynthesis and Transport |
| Streptothricin resistance |
| Sucrose utilization Shewanella |
| Sucrose-specific PTS |
| Sugar utilization in Thermotoga |
| Sugar utilization in Thermotogales |
| Sugar-phosphate stress regulation |
| Sulfate reduction-associated complexes |
| Symbiotic colonization and sigma-dependent biofilm formation gene cluster |
| Synthesis of osmoregulated periplasmic glucans |
| Teicoplanin-resistance in Staphylococcus |
| Terminal cytochrome C oxidases copy |
| Tetracycline resistance, ribosome protection type |
| Tetrathionate respiration |
| The fimbrial Sfm cluster |
| Thermosome, archaeal |
| Tn552 |
| Toxin co-regulated pilus |
| Trans-translation by stalled ribosomes |
| Translation elongation factors eukaryotic and archaeal |
| Translation initiation factors eukaryotic and archaeal |
| Transport of Iron |
| Transport of Manganese |
| Transport of Molybdenum |
| Transport of Zinc |
| TRAP Transporter unknown substrate 9 |
| tRNA aminoacylation, mitochondrial |
| tRNA modification Bacteria |
| tRNA modification position 37 |
| tRNA modification yeast cytoplasmic |
| tRNA modification yeast mitochondrial |
| tRNA splicing |
| Tryptophan catabolism |
| Two-component regulatory systems in Campylobacter |
| Two-component sensor regulator linked to Carbon Starvation Protein A |
| Type 4 conjugative transfer system, IncI1 type |
| Type 4 secretion and conjugative transfer |
| Type I Restriction-Modification |
| Type III secretion system |
| Type III secretion system orphans |
| Type VI secretion systems |
| Unknown carbohydrate utilization ( cluster Ydj ) |
| Unknown carbohydrate utilization containing Fructose-bisphosphate aldolase |
| Unknown oligosaccharide utilization Sde 1396 |
| USS-DB-1 |
| USS-DB-2 |
| USS-DB-3 |
| USS-DB-4 |
| USS-DB-5 |
| USS-DB-6 |
| Vibrio Core Oligosaccharide Biosynthesis |
| Vibrio pathogenicity island |
| Vibrio Polysaccharide (VPS) Biosynthesis |
| Wyeosine-MimG Biosynthesis |
| Xanthan Exopolysaccharide Biosynthesis and Export |
| Xylose utilization |
| YeiH |
| Yfa cluster |
| YgfZ |
| YjbEFGH Locus Involved in Exopolysaccharide Production |
| YrdC-YciO |
| Zinc regulated enzymes |
| Zinc resistance |
